Workflow
human_genomics_pipeline processes paired-end sequencing data (WGS or WES) using bwa, sambamba and GATK4. It is based on the GATK4 best practices for data pre-processing for variant discovery
- Run parameters:
- Input data type: Single
- Reference genome: /store/lkemp/publicData/referenceGenome/gatkBundle/GRCh37/ucsc.hg19.fasta
- dbSNP database /store/lkemp/publicData/dbSNP/gatkBundle/GRCh37/dbsnp_138.hg19.vcf
Click the nodes to obtain details about each step.
Base recalibration
Quality checks
Trimming
Statistics
If the workflow has been executed in cluster/cloud, runtimes include the waiting time in the queue.Loading...